代表性论文 |
▪ Chuan Dong, Dave Kudrna, Li Zhang, Shengqian Xia, Dylan Sosa, Deanna Arsala, Andrew G. Clark, Rod A. Wing, Manyuan Long, New gene evolution with subcellular expression patterns detected in long-read genomes of the Drosophila genus, 2022, doi: https://doi.org/10.1101/2022.11.30.518489. (In submission) ▪ Jiafeng Yu, Wenwen Jiang, Sen-Bin Zhu, Zhen Liao, Xianghua Dou, Jian Liu, Feng-Biao Guo*, Chuan Dong*. Prediction of protein-coding small ORFs in multi-species using integrated sequence-derived features and the random forest model. Methods, 210(1) 2023, 10-19. (通讯作者，IF: 4.8) ▪ Chuan Dong, Ge-Fei Hao, Hong-Li Hua, Shuo Liu, Abraham Alemayehu Labena, Guoshi Chai, Jian Huang, Nini Rao, Feng-Biao Guo*. Anti-CRISPRdb: a comprehensive online resource for anti-CRISPR proteins. Nucleic Acids Research, 2018, 46(D1): D393-D398. (五年平均IF: 16.4) ▪ Chuan Dong, Yan-Ting Jin, Hong-Li Hua, Qing-Feng Wen, Sen Luo, Wen-Xin Zheng, Feng-Biao Guo. Comprehensive review of the identification of essential genes using computational methods: focusing on feature implementation and assessment. Briefings in Bioinformatics, 2020, 21(1): 171-181. (IF: 9.5) ▪ Chuan Dong, Zhi Zeng, Dong-Kai Pu, Qing-Feng Wen, Shuo Liu, Meng-Ze Du, Yan Sun, Yi-Zhou Gao, Nini Rao, Jian Huang, Feng-Biao Guo. CasLocusAnno: a web-based server for annotating Cas loci and their corresponding (sub) types. FEBS Letters, 2019, 593(18):2646-2654. (IF: 4.1) ▪ Chuan Dong, Xin Wang, Cong Ma, Zhi Zeng, Dong-Kai Pu, Shuo Liu, Candy-S Wu, Shixin Chen, Zixin Deng, Feng-Biao Guo. Anti-CRISPRdb v2. 2: an online repository of anti-CRISPR proteins including information on inhibitory mechanisms, activities and neighbors of curated anti-CRISPR proteins. Database, 2022, 2022: baac010. (IF: 5.8) ▪ Chengchi Fang†, Chuan Dong,†, Cheng Wang, Fan Xiong, Xiaoni Gan, Liandong Yang, Honghui Zeng, Shunping He*. GageTracker: a tools for dating gene age by micro- and macro- collinearity in a high speed and accuracy (In submission) ▪ Yuan Huang, Jiahui Chen, Chuan Dong, Dylan Sosa, Shengqian Xia, Yidan Ouyang, Chuanzhu Fan, Dezhu Li, Emily Mortola, Manyuan Long, Joy Bergelson. Species-specific gene duplication in Arabidopsis thaliana evolved novel phenotypic effects on morphological traits under strong positive selection. The Plant Cell, 2022, 34(2): 802-817. (IF: 11.27) ▪ Guifa Zhai, Yan Zhu, Guo Sun, Fan Zhou, Yangning Sun, Zhou Hong, Chuan Dong, Peter F. Leadlay, Kui Hong, Zixin Deng, Fuling Zhou and Yuhui Sun. Insights into azalomycin F assembly-line contribute to evolution-guided polyketide synthase engineering and identification of intermodular recognition[J]. Nature Communications, 2023, 14(1): 612. (IF=14.919） ▪ Qing-Feng Wen, Shuo Liu, Chuan Dong, Hai-Xia Guo, Yi-Zhou Gao, Feng-Biao Guo*. Geptop 2.0: an updated, more precise, and faster Geptop server for identification of prokaryotic essential genes. Frontiers in Microbiology, 2019, 10: 1236. (IF: 5.64) |
